Results

Finished folder will contain:

1. query_files/* - directory containing all input query files.

2. mmseqs2_search_results.m8 - MMseqs2 search results.

3. alignments.json - results of alignment search implemented in utils.search_alignments.py

4. metadata* - files with some useful info.

5. results* - multiple files from DeepFRI. Organized by model type [‘GCN’ / ‘CNN’] and its mode [‘mf’, ‘bp’, ‘cc’, ‘ec’] for the total of 8 files. Sometimes results from one model can be missing which means that all query proteins sequences were aligned correctly or none of them were aligned.

   default

   mf = molecular_function
   bp = biological_process
   cc = cellular_component
   ec = enzyme_commission